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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015933762.1_cds_XP_016479954.1_71444
CDS Infomation

[gene=LOC107801185] [db_xref=GeneID:107801185] [protein=DNA mismatch repair protein MSH3-like] [protein_id=XP_016479954.1] [location=join(3916..4041,5338..5436,5522..5770,6106..6357,6434..6565,7680..7940,8018..8089,9381..9530,12753..13244,13528..13857)] [gbkey=CDS]
Sequence

ATGGAAGACCCAACAGATAATATCAAGTCTCAAATTGTAACACAGTGTCTTACAAGGAAG
ACCCAACAAATACCAATTCACAAAACAAGCAATCAGATGCCAGAATATTGTTTCACGATT
ACTTCAGTTTTGAAGAATAATTTTGACGGATCTGAGTCTGGCTCCTTGCTGCATTGTATG
AATCAGACACTTACCATATTTGGTTCAAGGCTTCTCAGGCATTGGGTGACTCATCCTTTA
TGTGATAGAAACATGATAGGTGCTCGTCTTGACGCAGTTTCAGAGATTGCAGAATCTATG
AAAACTTATCGAACTTCTCATACTTCTGTCTTAGAGATGGAAGGTGCTGATGTTACCATT
TCGCAATCAGAGATACATCATATAATTTCTTCAGTTCTGTCCACTCTGGGAAGGTCACCA
GATATCCAACGGGGGATTACAAGAATTTTTCACAAAAAAGCTACCGCATCTGAGTTTATT
GCAGTCATTCAAGCTATCTTGACTGCTGCAAAACAACTTCAGCAGCTTTGGATAGAAGAG
TATAAAAGTACGAATCTACAAAGAGAGACCTTGCGCTCAGTACTGTTGAGAAAGTTGATA
TCAATTGCCTCATCGTCTACTGTTATTAATGCTGCTGCAAAGCTTTTGTCTGCTTTAAAC
AAGGAAGCCGCTGACAGACGGGATCTTCACAATTTATTCTTCATTTCTGACGGAAAGTTC
CCTGAGGTTGCTGAAGGTACAAGGAGAGTTGAGTTGGCAAATGAGAAGTTAGACTCATTA
ATTGTTGTGTATCGCAAGCAGCTTCATATCCGCAATTTGGAGTACACGAGTGTAGCTGGA
ATTACACATTTGATAGAGCTGCCTCTAGACACAAAGGTGCCGCCAGACTGGGTGAAAGTG
AACAGTACTAAGAAAGCAATACGCTATCATCCACCAGAAGTATTGGTGGCTTTAGATGAG
TTAGCATTGGCAAATGAGCAGCTCACTATCGTTTGCCAAGCTGCTTGGAATAATTTTTTA
ACGAGGTTTGGTGGATACTTTGCTGAGTTCCAAGCTGCTGTGCAGGCGCTGGCTTCATTG
GATTGTCTAAATTCTCTTGCCATTCTTTCGAGGAATAAGAATTATGTCCGTCCACTTTTT
GTGAAAGATGATGAGGCTGTTCAGATACATATTTGCTCTGGTCGTCACCCGGTTTTGGAG
AGAGTATTACAAGAGAACTTTGTCCCAAATGATACAGATTTGCATGCAGAAAGAGAGTAT
TGTCAGATTGTTACTGGACCAAATATGGGAGGAAAAAGCTGCTATATTCGCCAAGTTGCT
CTTATCGCTTTGATGGCTCAGGTTGGATCCTTTGTTCCAGCGTTCTCTGCAAAACTGCAA
GTGCTAGATGGCATATATACTCGCATGGGTGCATCCGACAGTATACAGCAAGGAAGAAGT
ACATTCTTAGAAGAACTCAGCGAGGCTTCTGATATACTGAAAAAATGCTCAGCCAGCTCA
TTGGTTATACTTGATGAGCTTGGGAGAGGCACCAGTACACATGACGGCGTAGCAATTGCT
TATGCAACACTTCAGTATCTCCTAGAACACAAGAAATGCATGATTCTATTTGTCACCCAT
TACCCTGAAATTGTCAGTATCAAGAATGAATATCCAGGCTCCGTGGGACCATACCATGTG
TCATATCTGACATCCCAAAGAGAAGTGAATGGGGATTTCAAGTCAAATGAGAAGATGGAT
CACATCAATAGTGAAGACATCACCTACCTTTACAAACTTGCACCAGGGGTCTGCGAGAGA
AGTTTTGGTTTTAAAGTTGCTCAGCTTGCACAACTGCCGGTTATGTGTATTCAACGAGCC
ATCGTAATAGCTGGAAGACTAGAAGCAGCAGTCTCTAACTACACAACGCAAAATCGAACT
AGAAGGAGCTCTTCCATAAGTTATAGCAAAGATGGTTGTAAGGTATCTGAACCAGTGGAG
TATGTCTTAGAACCTGATTGCTTGTCTGCTGGAAGAGTTGAACACTTAGATGATATGGGC
GAGCTTTACAGGGAGTTCTTTCTGAACCTAAACTTCGCACTTCTTGAAGAACATGATGAT
GACAGGAGGCTCCAGTTTCTAATGCAGGCTAGAAGCCTTGCTGCTCAGTTAATAAGTAGT
TAA

Peptide Sequence

PEP ID

XP_016479954.1
PEP Infomation

PREDICTED: DNA mismatch repair protein MSH3-like [Nicotiana tabacum]
Sequence

MEDPTDNIKSQIVTQCLTRKTQQIPIHKTSNQMPEYCFTITSVLKNNFDGSESGSLLHCM
NQTLTIFGSRLLRHWVTHPLCDRNMIGARLDAVSEIAESMKTYRTSHTSVLEMEGADVTI
SQSEIHHIISSVLSTLGRSPDIQRGITRIFHKKATASEFIAVIQAILTAAKQLQQLWIEE
YKSTNLQRETLRSVLLRKLISIASSSTVINAAAKLLSALNKEAADRRDLHNLFFISDGKF
PEVAEGTRRVELANEKLDSLIVVYRKQLHIRNLEYTSVAGITHLIELPLDTKVPPDWVKV
NSTKKAIRYHPPEVLVALDELALANEQLTIVCQAAWNNFLTRFGGYFAEFQAAVQALASL
DCLNSLAILSRNKNYVRPLFVKDDEAVQIHICSGRHPVLERVLQENFVPNDTDLHAEREY
CQIVTGPNMGGKSCYIRQVALIALMAQVGSFVPAFSAKLQVLDGIYTRMGASDSIQQGRS
TFLEELSEASDILKKCSASSLVILDELGRGTSTHDGVAIAYATLQYLLEHKKCMILFVTH
YPEIVSIKNEYPGSVGPYHVSYLTSQREVNGDFKSNEKMDHINSEDITYLYKLAPGVCER
SFGFKVAQLAQLPVMCIQRAIVIAGRLEAAVSNYTTQNRTRRSSSISYSKDGCKVSEPVE
YVLEPDCLSAGRVEHLDDMGELYREFFLNLNFALLEEHDDDRRLQFLMQARSLAAQLISS

Transcript Sequence

Gene sequence data has not been registered.